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miRBase |
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Stem-loop sequence mmu-mir-488 |
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Accession | MI0004633 (change log) | ||||
Symbol | MGI:Mir488 | ||||
Description | Mus musculus miR-488 stem-loop | ||||
Gene family | MIPF0000318; mir-488 | ||||
Literature search |
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11 open access papers mention mmu-mir-488 | ||||
Stem-loop |
u g a c cu c u a c guu 5' uucggg gaga ugaga uc ucu cc aga aauagc cu ucaaacaa u |||||| |||| ||||| || ||| || ||| |||||| || |||||||| c 3' aggucu cuuu acucu ag aga gg ucu uugucg ga aguuuguu c u a c a cu u - - a gua |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The predominant miRNA cloned by Langraf et al. has a 3' terminal U residue, which is incompatible with the genome sequence [2]. |
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Genome context |
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Database links |
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Mature sequence mmu-miR-488-5p |
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Accession | MIMAT0003449 |
Previous IDs | mmu-miR-488;mmu-miR-488* |
Sequence |
27 - cccagauaauagcacucucaa - 47 |
Deep sequencing | 288 reads, 21 experiments |
Evidence | experimental; Illumina [3-4] |
Database links |
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Predicted targets |
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Mature sequence mmu-miR-488-3p |
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Accession | MIMAT0003450 |
Previous IDs | mmu-miR-488*;mmu-miR-488 |
Sequence |
65 - uugaaaggcuguuucuugguc - 85 |
Deep sequencing | 11715 reads, 45 experiments |
Evidence | experimental; MPSS [1], cloned [2], Illumina [3-4] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:16582102
"The expression profile of microRNAs in mouse embryos"
Nucleic Acids Res. 34:1765-1771(2006).
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2 |
PMID:17604727
"A mammalian microRNA expression atlas based on small RNA library sequencing"
Cell. 129:1401-1414(2007).
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3 |
PMID:20215419
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
Mol Hum Reprod. 16:463-471(2010).
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4 |
PMID:20413612
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
Genes Dev. 24:992-1009(2010).
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