Stem-loop sequence mmu-mir-679

Accession MI0004638
Symbol MGI:Mir679
Description Mus musculus miR-679 stem-loop
Gene family MIPF0001564; mir-679
Stem-loop 
c       uugg         -u   u    g  ---u  g 
 uauggcu    acugugagg  gac cuug ug    gu a
 |||||||    |||||||||  ||| |||| ||    ||  
 auaucga    ugacacucc  cug gaac ac    cg u
-       ----         uc   -    g  uuuu  g
Get sequence
Deep sequencing
637 reads, 34 experiments
Genome context
Coordinates (GRCm38) Overlapping transcripts
chr12: 109715577-109715650 [+]
intergenic
Clustered miRNAs
< 10kb from mmu-mir-679
mmu-mir-379 chr12: 109709060-109709125 [+]
mmu-mir-411 chr12: 109710175-109710256 [+]
mmu-mir-299a chr12: 109710638-109710700 [+]
mmu-mir-299b chr12: 109710645-109710693 [-]
mmu-mir-380 chr12: 109711803-109711863 [+]
mmu-mir-1197 chr12: 109712317-109712436 [+]
mmu-mir-323 chr12: 109712508-109712593 [+]
mmu-mir-758 chr12: 109712810-109712890 [+]
mmu-mir-329 chr12: 109713481-109713577 [+]
mmu-mir-494 chr12: 109715318-109715402 [+]
mmu-mir-679 chr12: 109715577-109715650 [+]
mmu-mir-1193 chr12: 109715671-109715791 [+]
mmu-mir-666 chr12: 109717085-109717183 [+]
mmu-mir-543 chr12: 109717258-109717333 [+]
mmu-mir-495 chr12: 109718754-109718816 [+]
mmu-mir-667 chr12: 109720006-109720097 [+]
mmu-mir-376c chr12: 109722718-109722803 [+]
mmu-mir-654 chr12: 109723218-109723301 [+]
mmu-mir-376b chr12: 109723458-109723539 [+]
mmu-mir-376a chr12: 109723781-109723848 [+]
mmu-mir-300 chr12: 109724313-109724391 [+]
Database links

Mature sequence mmu-miR-679-5p

Accession MIMAT0003455
Previous IDs mmu-miR-679
Sequence

11 -  

ggacugugaggugacucuuggu

 - 32

Get sequence
Deep sequencing 191 reads, 26 experiments
Evidence experimental; MPSS [1], Solexa [2-3]
Predicted targets

Mature sequence mmu-miR-679-3p

Accession MIMAT0017248
Sequence

48 -  

agcaagguccuccucacaguag

 - 69

Get sequence
Deep sequencing 444 reads, 28 experiments
Evidence experimental; Solexa [3]
Predicted targets

References

1
PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).