Stem-loop sequence mmu-mir-297b

Accession

MI0004674 (change log)

Symbol

MGI:Mir297b

Description

Mus musculus miR-297b stem-loop

Gene family

MIPF0000204; mir-297

Literature search

10 open access papers mention mmu-mir-297b
(12 sentences)

Stem-loop

          gc        --a         g  c   aac      a    a   u 
5' ucuauuu  uugugugu   uauguaugu ug aug   augugu uaug aua a
   |||||||  ||||||||   ||||||||| || |||   |||||| |||| |||  
3' agguaaa  gacacaca   auacguaca ac uac   uacaca auac uau c
          -a        aac         a  a   cca      c    a   a 

Deep sequencing

11383 reads, 35.6 reads per million, 101 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10511667-10511775 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-297b

• mmu-mir-467a-10: chr2: 10503273-10503355 [+]
• mmu-mir-466b-3: chr2: 10503565-10503645 [+]
• mmu-mir-669a-12: chr2: 10503791-10503877 [+]
• mmu-mir-467e: chr2: 10505721-10505807 [+]
• mmu-mir-466p: chr2: 10506006-10506094 [+]
• mmu-mir-467d: chr2: 10507630-10507714 [+]
• mmu-mir-466a: chr2: 10507918-10507990 [+]
• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]
• mmu-mir-466l: chr2: 10516097-10516217 [+]
• mmu-mir-297a-4: chr2: 10517067-10517164 [+]
• mmu-mir-669i: chr2: 10517604-10517730 [+]
• mmu-mir-669h: chr2: 10518155-10518279 [+]

Database links

• EntrezGene:Mir297b
• MGI:Mir297b
• RNAcentral:URS000075D088_10090
• miRBase Tracker:MI0004674

Mature sequence mmu-miR-297b-5p

• Accession: MIMAT0003480
• Previous IDs: mmu-miR-297b
• Sequence: 20 - auguaugugugcaugaacaugu - 41
• Deep sequencing: 4464 reads, 80 experiments
• Evidence: experimental; MPSS [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS00004268E1_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-297b-5p
  • miRDB:mmu-miR-297b-5p
  • microrna.org:mmu-miR-297b-5p

Mature sequence mmu-miR-297b-3p

• Accession: MIMAT0004827
• Sequence: 57 - uauacauacacacauacccaua - 78
• Deep sequencing: 6900 reads, 93 experiments
• Evidence: experimental; cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00000D45B2_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-297b-3p
  • miRDB:mmu-miR-297b-3p
  • microrna.org:mmu-miR-297b-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).