Stem-loop sequence mmu-mir-499

Accession

MI0004676

Symbol

MGI:Mir499

Description

Mus musculus miR-499 stem-loop

Gene family

MIPF0000173; mir-499

Stem-loop

gggu       u  ua        a          ---  uc 
    gggcagc gu  agacuugc gugauguuua   gc  c
    ||||||| ||  |||||||| ||||||||||   ||   
    uccgucg cg  ucugaacg cacuacaagu   cg  u
----       u  ug        a          gua  uc 

Deep sequencing

74574 reads, 80 experiments

Genome context

• Coordinates (GRCm38): chr2: 155622880-155622958 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000038477 ; Myh7b-001; intron 19

  ENSMUST00000092995 ; Myh7b-001; intron 19

Database links

• ENTREZGENE: 735275;Mir499
• MGI: 3629633;Mir499

Mature sequence mmu-miR-499-5p

• Accession: MIMAT0003482
• Previous IDs: mmu-miR-499
• Sequence: 14 - uuaagacuugcagugauguuu - 34
• Deep sequencing: 22032 reads, 66 experiments
• Evidence: experimental; MPSS [1], cloned [2], Solexa [3-4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-499-5p
  • MICRORNA.ORG:mmu-miR-499-5p
  • MIRDB:mmu-miR-499-5p
  • RNA22-MMU:mmu-miR-499-5p
  • TARGETSCAN-VERT:mmu-miR-499

Mature sequence mmu-miR-499-3p

• Accession: MIMAT0017254
• Previous IDs: mmu-miR-499*
• Sequence: 50 - gaacaucacagcaagucugugcu - 72
• Deep sequencing: 1358 reads, 21 experiments
• Evidence: experimental; Solexa [4]
• Predicted targets:
  • DIANA-MICROT:mmu-miR-499-3p
  • MIRDB:mmu-miR-499-3p
  • RNA22-MMU:mmu-miR-499-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).