miRBase entry: mmu-mir-499

Stem-loop mmu-mir-499


Accession
MI0004676
Symbol
MGI: Mir499
Description
Mus musculus mmu-mir-499 precursor miRNA mir-499
Gene
family?
RF00745; mir-499

Literature search
66 open access papers mention mmu-mir-499
(607 sentences)

Sequence

16038 reads, 273 reads per million, 79 experiments
gggugggcagcugUUAAGACUUGCAGUGAUGUUUagcuccucugcauguGAACAUCACAGCAAGUCUGUGCUgcugccu
....(((((((.((..((((((((.((((((((((((......))...)))))))))).))))))))..)).)))))))

Structure
gggu       u  UA        A          ---  uc 
    gggcagc gU  AGACUUGC GUGAUGUUUa   gc  c
    ||||||| ||  |||||||| ||||||||||   ||   
    uccgucg CG  UCUGAACG CACUACAAGu   cg  u
----       U  UG        A          gua  uc 


Annotation confidence High
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Genome context
chr2: 155622880-155622958 [+]

Database links

Mature mmu-miR-499-5p

Accession MIMAT0003482
Description Mus musculus mmu-miR-499-5p mature miRNA
Sequence 14 - UUAAGACUUGCAGUGAUGUUU - 34
Evidence experimental
MPSS [1], cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-499-3p

Accession MIMAT0017254
Description Mus musculus mmu-miR-499-3p mature miRNA
Sequence 50 - GAACAUCACAGCAAGUCUGUGCU - 72
Evidence experimental
Illumina [4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 16582102
    The expression profile of microRNAs in mouse embryos
    "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
    "Nucleic Acids Res (2006) 34:1765-1771