Stem-loop sequence mmu-mir-499

Accession

MI0004676 (change log)

Symbol

MGI:Mir499

Description

Mus musculus miR-499 stem-loop

Gene family

MIPF0000173; mir-499

Literature search

66 open access papers mention mmu-mir-499
(600 sentences)

Stem-loop

   gggu       u  ua        a          ---  uc 
5'     gggcagc gu  agacuugc gugauguuua   gc  c
       ||||||| ||  |||||||| ||||||||||   ||   
3'     uccgucg cg  ucugaacg cacuacaagu   cg  u
   ----       u  ug        a          gua  uc 

Deep sequencing

18282 reads, 83.1 reads per million, 83 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 155622880-155622958 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000038477 ; Myh7b-001; intron 19

  ENSMUST00000092995 ; Myh7b-001; intron 19

Database links

• EntrezGene:Mir499
• MGI:Mir499
• RNAcentral:URS000075C202_10090
• miRBase Tracker:MI0004676

Mature sequence mmu-miR-499-5p

• Accession: MIMAT0003482
• Previous IDs: mmu-miR-499
• Sequence: 14 - uuaagacuugcagugauguuu - 34
• Deep sequencing: 17523 reads, 82 experiments
• Evidence: experimental; MPSS [1], cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS00000C7662_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-499-5p
  • miRDB:mmu-miR-499-5p
  • microrna.org:mmu-miR-499-5p

Mature sequence mmu-miR-499-3p

• Accession: MIMAT0017254
• Previous IDs: mmu-miR-499*
• Sequence: 50 - gaacaucacagcaagucugugcu - 72
• Deep sequencing: 759 reads, 28 experiments
• Evidence: experimental; Illumina [4]
• Database links:
  • RNAcentral:URS00001105D0_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-499-3p
  • miRDB:mmu-miR-499-3p

References

1. PMID:16582102 "The expression profile of microRNAs in mouse embryos" Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I Nucleic Acids Res. 34:1765-1771(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).