miRBase entry: ppt-MIR1216

Stem-loop ppt-MIR1216


Accession
MI0004715
Description
Physcomitrella patens ppt-MIR1216 precursor miRNA


Sequence

gcgagguugguuuuguauguccagugucugucaaugucguUGAUGGUGAUGCGCUUGUAUCucgaaaggaccauucgugagggaauggugucgucguguuacaagcccaucacccucaacgacaugacccgccuguuucauacuccaccaaaccucgc
(((((((((((...(((((..(((.((..((((.(((((((((.(((((((.(((((((.(.(((..(.(((((((......))))))).)..))).).))))))).))))))).)))))))))))))..)))))...)))))...))).))))))))

Structure
        -   uuu     -uc   u  cu    a         U       C       U u   aa g       gu 
gcgagguu ggu   guaug   cag gu  guca ugucguUGA GGUGAUG GCUUGUA C cga  g accauuc  g
|||||||| |||   |||||   ||| ||  |||| ||||||||| ||||||| ||||||| | |||  | |||||||   
cgcuccaa cca   cauac   guc cg  cagu acagcaacu ccacuac cgaacau g gcu  u ugguaag  a
        a   ccu     uuu   -  cc    -         c       c       u u   gc g       gg 


Annotation confidence Not enough data
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Genome context
Chr06: 863403-863560 [+]

Database links

Mature ppt-miR1216

Accession MIMAT0003905
Description Physcomitrella patens ppt-miR1216 mature miRNA
Sequence 41 - UGAUGGUGAUGCGCUUGUAUC - 61
Evidence experimental
Northern [1], 454 [2]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769

  2. PubMed ID: 16824179
    Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
    "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
    "Plant J (2006) 47:25-37