Stem-loop ppt-MIR1220a

Accession

MI0004722

Description

Physcomitrella patens ppt-MIR1220a precursor miRNA

Gene family

MIPF0000359; MIR1220

Sequence

acuucuugcacuccucuaucucccucggcaccugcacagugauuuucucaauaucuucacguugguggccacguucgaacauaucccaugcgggcaacuccggcguagguguacacggccagcguugcuuaccaucuggaggauacccuugcucaaaccuacgacucugUUCCGGUGGUGAGGAAGAUAGaggaguucaagaagu
((((((((.((((((((((((.(((((.((((.(.(((((((..............))))(((((..(((.(((...............))))))....)))))((((((......(((.((.((..(((.((....)))))..)).)).)))...)))))).....))).).)))).))))).)))))))))))).))))))))

Structure

        c            c     g    u c   gugauuuucucaauaucuucacguugguggccacguucgaacauaucccaugcgggcaacuccggc      guacac   c  c  ug   a  a 
acuucuug acuccucuaucu ccucg cacc g aca                                                                  guaggu      ggc ag gu  cuu cc u
|||||||| |||||||||||| ||||| |||| | |||                                                                  ||||||      ||| || ||  ||| ||  
ugaagaac ugaggaGAUAGA GGAGU GUGG C Ugu                                                                  caucca      ucg uc ca  gga gg c
        u            A     G    C U   -------------------------------------------------------------cucag      ---aac   u  c  ua   -  u 

Annotation confidence Not enough data

Comments

The mature miRNA shown here is the predominant clone by deep sequencing [2]. Talmor-Neiman et al. identify an offset product by Northern blot [1].

Genome context

Chr03: 8658590-8658794 [+]

Mature ppt-miR1220a

• Accession: MIMAT0004831
• Description: Physcomitrella patens ppt-miR1220a mature miRNA
• Sequence: 170 - UUCCGGUGGUGAGGAAGAUAG - 190
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37