Stem-loop ppt-MIR533b

Accession

MI0004724

Description

Physcomitrella patens ppt-MIR533b precursor miRNA

Gene family

MIPF0000356; MIR533

Sequence

ggaggaccgauauggaGAGCUGUCCAGGCUGUGAGGGgagcacucguauucuuuugaccuuugcuagaagagggaauacagcgcucuccCUCACAGUCUGUACAGCUCUCuguaucucuuccucu
((((((..(((((((((((((((.(((((((((((((((((.((.((((((((((...((.....))..)))))))))))).)))).))))))))))))).)))))))))))))))))))))...

Structure

---      cc               C             -    a  c          gac  u 
   ggagga  gauauggaGAGCUGU CAGGCUGUGAGGG gagc cu guauucuuuu   cu u
   ||||||  ||||||||||||||| ||||||||||||| |||| || ||||||||||   || g
   ccuucu  cuauguCUCUCGACA GUCUGACACUCcc cucg ga cauaagggag   ga c
ucu      --               U             u    c  -          -aa  u 

Annotation confidence Not enough data

Comments

Axtell et al. show that mature products from both arms are significantly expressed [3], named here miR533b-5p and miR533b-3p.

Genome context

Chr11: 14895410-14895534 [+]

Mature ppt-miR533b-5p

• Accession: MIMAT0003914
• Description: Physcomitrella patens ppt-miR533b-5p mature miRNA
• Sequence: 17 - GAGCUGUCCAGGCUGUGAGGG - 37
• Evidence: experimental ; cloned [3]

Mature ppt-miR533b-3p

• Accession: MIMAT0004833
• Description: Physcomitrella patens ppt-miR533b-3p mature miRNA
• Sequence: 90 - CUCACAGUCUGUACAGCUCUC - 110
• Evidence: experimental ; 454 [3]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


3. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37