Stem-loop hsv1-mir-H1

Accession

MI0004730

Description

Herpes Simplex Virus 1 hsv1-mir-H1 precursor miRNA

Sequence

cgaggggaacggggGAUGGAAGGACGGGAAGUGGAaguccugauacccauccUACACCCCCCUGCCUUCCACCCUccggccccccg
((.((((..((((((.(((((((..(((..(((.....................)))..)))..))))))).))))))..))))))

Structure

  a    aa      A       AC   AA   GAaguccug 
cg gggg  cggggG UGGAAGG  GGG  GUG         a
|| ||||  |||||| |||||||  |||  |||         u
gc cccc  gccUCC ACCUUCC  CCC  CAC         a
  -    cg      C       GU   CC   AUccuaccc 

Annotation confidence Not enough data

Genome context

Unknown

Disease association

hsv1-mir-H1 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsv1-miR-H1-5p

• Accession: MIMAT0003744
• Description: Herpes Simplex Virus 1 hsv1-miR-H1-5p mature miRNA
• Sequence: 15 - GAUGGAAGGACGGGAAGUGGA - 35
• Evidence: experimental ; Northern [1], Illumina [2]

Mature hsv1-miR-H1-3p

• Accession: MIMAT0015220
• Description: Herpes Simplex Virus 1 hsv1-miR-H1-3p mature miRNA
• Sequence: 53 - UACACCCCCCUGCCUUCCACCCU - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 16699030
   Prediction and identification of herpes simplex virus 1-encoded microRNAs
   "Cui C, Griffiths A, Li G, Silva LM, Kramer MF, Gaasterland T, Wang XJ, Coen DM"
   "J Virol (2006) 80:5499-5508


2. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672