miRBase entry: hsv1-mir-H1

Stem-loop hsv1-mir-H1


Accession
MI0004730
Description
Herpes Simplex Virus 1 hsv1-mir-H1 precursor miRNA
Gene family
MIPF0000738; mir-H1


Sequence

cgaggggaacggggGAUGGAAGGACGGGAAGUGGAaguccugauacccauccUACACCCCCCUGCCUUCCACCCUccggccccccg
((.((((..((((((.(((((((..(((..(((.....................)))..)))..))))))).))))))..))))))

Structure
  a    aa      A       AC   AA   GAaguccug 
cg gggg  cggggG UGGAAGG  GGG  GUG         a
|| ||||  |||||| |||||||  |||  |||         u
gc cccc  gccUCC ACCUUCC  CCC  CAC         a
  -    cg      C       GU   CC   AUccuaccc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Disease association
hsv1-mir-H1 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsv1-miR-H1-5p

Accession MIMAT0003744
Description Herpes Simplex Virus 1 hsv1-miR-H1-5p mature miRNA
Sequence 15 - GAUGGAAGGACGGGAAGUGGA - 35
Evidence experimental
Northern [1], Illumina [2]

Mature hsv1-miR-H1-3p

Accession MIMAT0015220
Description Herpes Simplex Virus 1 hsv1-miR-H1-3p mature miRNA
Sequence 53 - UACACCCCCCUGCCUUCCACCCU - 75
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 16699030
    Prediction and identification of herpes simplex virus 1-encoded microRNAs
    "Cui C, Griffiths A, Li G, Silva LM, Kramer MF, Gaasterland T, Wang XJ, Coen DM"
    "J Virol (2006) 80:5499-5508

  2. PubMed ID: 20181707
    Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
    "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
    "J Virol (2010) 84:4659-4672