Stem-loop sequence bta-mir-18a

Accession

MI0004740 (change log)

Description

Bos taurus miR-18a stem-loop

Gene family

MIPF0000001; mir-17

Literature search

7 open access papers mention bta-mir-18a
(23 sentences)

Stem-loop

   u   cu    u   uc   u    a   -  aa u 
5'  guu  aagg gca  uag gcag uag ug  g a
    |||  |||| |||  ||| |||| ||| ||  | g
3'  cgg  uucc cgu  auc cguc auc ac  u a
   a   uc    u   ga   c    -   u  ga u 

Deep sequencing

4386 reads, 5.88 reads per million, 68 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr12: 66421379-66421449 [+]
• Overlapping transcripts:

  sense

  ENSBTAT00000042226 ; bta-mir-18a-201; exon 1

Clustered miRNAs

< 10kb from bta-mir-18a

• bta-mir-17: chr12: 66421236-66421319 [+]
• bta-mir-18a: chr12: 66421379-66421449 [+]
• bta-mir-19a: chr12: 66421518-66421599 [+]
• bta-mir-20a: chr12: 66421687-66421757 [+]
• bta-mir-19b: chr12: 66421815-66421901 [+]
• bta-mir-92a-1: chr12: 66421937-66422014 [+]

Database links

• EntrezGene:MIR18A
• RNAcentral:URS00003B0CDB_9913
• miRBase Tracker:MI0004740

Mature sequence bta-miR-18a

• Accession: MIMAT0003526
• Sequence: 6 - uaaggugcaucuagugcagaua - 27
• Deep sequencing: 3974 reads, 67 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:bta-miR-18a

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).