Stem-loop bta-mir-27a

Accession

MI0004746

Description

Bos taurus bta-mir-27a precursor miRNA

Gene family

MIPF0000036; mir-27

Literature search

31 open access papers mention bta-mir-27a
(71 sentences)

Sequence

98413 reads, 1180 reads per million, 75 experiments

uggccuggggagcAGGGCUUAGCUGCUUGUGAGCAgguccacaucaaaucgugUUCACAGUGGCUAAGUUCCGccccc
......((((.((.(((((((((((((.(((((((.(............).)))))))))))))))))))).))))))

Structure

uggccu    a  A             U       g uccac 
      gggg gc GGGCUUAGCUGCU GUGAGCA g     a
      |||| || ||||||||||||| ||||||| |      
      cccc cG CUUGAAUCGGUGA CACUUgu c     u
------    -  C             -       g uaaac 

Annotation confidence High

Genome context

chr7: 13046007-13046084 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-27a

Mature bta-miR-27a-5p

• Accession: MIMAT0012532
• Description: Bos taurus bta-miR-27a-5p mature miRNA
• Sequence: 14 - AGGGCUUAGCUGCUUGUGAGCA - 35
• Evidence: experimental ; Illumina [2]

Mature bta-miR-27a-3p

• Accession: MIMAT0003532
• Description: Bos taurus bta-miR-27a-3p mature miRNA
• Sequence: 54 - UUCACAGUGGCUAAGUUCCG - 73
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19633723
   Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
   Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
   PLoS One (2009) 4:e6349