Stem-loop sequence bta-mir-27a

Accession

MI0004746 (change log)

Description

Bos taurus miR-27a stem-loop

Gene family

MIPF0000036; mir-27

Literature search

31 open access papers mention bta-mir-27a
(69 sentences)

Stem-loop

   uggccu    a  a         ug  u       g uccac 
5'       gggg gc gggcuuagc  cu gugagca g     a
         |||| || |||||||||  || ||||||| |      
3'       cccc cg cuugaaucg  ga cacuugu c     u
   ------    -  c         gu  -       g uaaac 

Deep sequencing

2478637 reads, 2.54e+04 reads per million, 78 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr7: 13046007-13046084 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-27a

• bta-mir-23a: chr7: 13046186-13046258 [-]
• bta-mir-27a: chr7: 13046007-13046084 [-]
• bta-mir-24-2: chr7: 13045858-13045929 [-]

Database links

• EntrezGene:MIR27A
• RNAcentral:URS000075DA7A_9913
• miRBase Tracker:MI0004746

Mature sequence bta-miR-27a-5p

• Accession: MIMAT0012532
• Sequence: 14 - agggcuuagcugcuugugagca - 35
• Deep sequencing: 508 reads, 68 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:bta-miR-27a-5p

Mature sequence bta-miR-27a-3p

• Accession: MIMAT0003532
• Previous IDs: bta-miR-27a
• Sequence: 54 - uucacaguggcuaaguuccg - 73
• Deep sequencing: 2478129 reads, 78 experiments
• Evidence: experimental; cloned [1], Illumina [2]
• Predicted targets:
  • TargetScanVert:bta-miR-27a-3p

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).
2. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).