Stem-loop bta-mir-125b-1

Accession

MI0004753

Description

Bos taurus bta-mir-125b-1 precursor miRNA

Literature search

35 open access papers mention bta-mir-125b-1
(118 sentences)

Sequence

102405 reads, 1071 reads per million, 77 experiments

cgcgcgccucucaaUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccacggguuaggcucuugggagcugcgagucgcgcc
.(((((.(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).))).))))).

Structure

c     c   u  -a    U    C           Au     c 
 gcgcg cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
 ||||| ||| ||  |||| |||| |||||||||||  ||||| g
 cgcgc gag gu  aggg uucu ggauugggcac  uaaau u
c     u   c  cg    -    c           -c     u 

Annotation confidence High

Genome context

chr15: 33484663-33484750 [-]

Mature bta-miR-125b

• Accession: MIMAT0003539
• Description: Bos taurus bta-miR-125b mature miRNA
• Sequence: 15 - UCCCUGAGACCCUAACUUGUGA - 36
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 17306260
   Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
   "Gu Z, Eleswarapu S, Jiang H"
   "FEBS Lett (2007) 581:981-988


3. PubMed ID: 19267191
   Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
   "Long JE, Chen HX"
   "Biochem Genet (2009) 47:329-343