miRBase entry: xtr-mir-7-1

Stem-loop xtr-mir-7-1


Accession
MI0004790
Description
Xenopus tropicalis xtr-mir-7-1 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

uggauguugguuuaguucugugUGGAAGACUAGUGAUUUUGUUGuuuuuagauaacaacauugacaacaaaucgcagucugccauauggcacagaccaugccucuaca
((((.((((((((.((.((((((((.(((((.(((((((.((((((................)))))))))))))))))).)))))))).)))))))).)).))))..

Structure
--    u  -      a  u        A     A       U      uuuagau 
  ugga gu ugguuu gu cugugUGG AGACU GUGAUUU GUUGuu       a
  |||| || |||||| || |||||||| ||||| ||||||| ||||||        
  aucu cg accaga ca gguauacc ucuga cgcuaaa caacag       a
ac    c  u      -  c        g     -       -      uuacaac 


Annotation confidence Not enough data
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Genome context
chr1: 122025378-122025485 [-]

Database links

Mature xtr-miR-7

Accession MIMAT0003552
Description Xenopus tropicalis xtr-miR-7 mature miRNA
Sequence 23 - UGGAAGACUAGUGAUUUUGUUG - 44
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112