miRBase entry: xtr-mir-16a

Stem-loop xtr-mir-16a

Accession

MI0004802

Description

Xenopus tropicalis xtr-mir-16a precursor miRNA

Gene family

MIPF0000006; mir-15

Sequence

gccagcaguccuuUAGCAGCACGUAAAUAUUGGUGuuaaaauggucccaauauuaacugugcugcuagaguaagguuggccu
((((((....((((((((((((((.((((((((.(..........))))))))).)).))))))))))))....))))))..

Structure

--      aguc            -  A        U uuaa 
  gccagc    cuuUAGCAGCAC GU AAUAUUGG G    a
  ||||||    |||||||||||| || |||||||| |     
  cgguug    gagaucgucgug ca uuauaacc c    a
uc      gaau            u  a        - uggu

Annotation confidence Not enough data

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Genome context

chr2: 146575390-146575471 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-16a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-16a

Accession	MIMAT0003563
Description	Xenopus tropicalis xtr-miR-16a mature miRNA
Sequence	14 - UAGCAGCACGUAAAUAUUGGUG - 35
Evidence	experimental Northern [1]

References

PubMed ID: 18032731
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
"Tang GQ, Maxwell ES"
"Genome Res (2008) 18:104-112