miRBase entry: xtr-mir-17

Stem-loop xtr-mir-17


Accession
MI0004803
Description
Xenopus tropicalis xtr-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

gucaagaguaauguCAAAGUGCUUACAGUGCAGGUAGUgauuuaacagaaccuACUGCAGUGAAGGCACUUGUagcauuauauugac
(((((..(((((((..((((((((.((.(((((.(((.(.(((....)))))))))))).)).))))))))...))))))).)))))

Structure
     ga       -CA        A  G     G   U a   a 
gucaa  guaaugu   AAGUGCUU CA UGCAG UAG g uuu a
|||||  |||||||   |||||||| || ||||| ||| | |||  
caguu  uauuacg   UUCACGGA GU ACGUC Auc c aag c
     -a       aUG        A  G     -   - -   a 


Annotation confidence Not enough data
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Genome context
chr2: 120020382-120020468 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from xtr-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-17-5p

Accession MIMAT0003564
Description Xenopus tropicalis xtr-miR-17-5p mature miRNA
Sequence 15 - CAAAGUGCUUACAGUGCAGGUAGU - 38
Evidence experimental
Northern [1]

Mature xtr-miR-17-3p

Accession MIMAT0003565
Description Xenopus tropicalis xtr-miR-17-3p mature miRNA
Sequence 54 - ACUGCAGUGAAGGCACUUGU - 73
Evidence not_experimental

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112