Stem-loop xtr-mir-98

Accession

MI0004820

Description

Xenopus tropicalis xtr-mir-98 precursor miRNA

Gene family

MIPF0000002; let-7

Sequence

ucugcccucuucaggaUGAGGUAGUAAGUUGUAUUGUUguggggguuuuuauuuccccaaauuaggagauaacuauacagcuuacugccuucccugcagcaugguaau
..((((.(((.((((..(((((((((((((((((.((((((((((........))))))..........)))).))))))))))))))))).)))).)).).))))..

Structure

uc    c -  u    aU                 U    ----------      uuu 
  ugcc u cu cagg  GAGGUAGUAAGUUGUAU GUUg          uggggg   u
  |||| | || ||||  ||||||||||||||||| ||||          ||||||    
  augg a ga gucc  uuccgucauucgacaua caau          accccu   u
ua    u c  c    -c                 u    agaggauuaa      uua 

Annotation confidence Not enough data

Genome context

chr8: 8410552-8410659 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-98

Mature xtr-miR-98

• Accession: MIMAT0003581
• Description: Xenopus tropicalis xtr-miR-98 mature miRNA
• Sequence: 17 - UGAGGUAGUAAGUUGUAUUGUU - 38
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112