Stem-loop sequence xtr-mir-194-1

AccessionMI0004857
DescriptionXenopus tropicalis miR-194-1 stem-loop
Gene family MIPF0000055; mir-194
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-194_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

In molecular biology, miR-194 microRNA precursor is a small non-coding RNA gene that regulated gene expression. Its expression has been verified in mouse (MI0000236, MI0000733) and in human (MI0000488, MI0000732). mir-194 appears to be a vertebrate-specific miRNA and has now been predicted or experimentally confirmed in a range of vertebrate species (MIPF0000055). The mature microRNA is processed from the longer hairpin precursor by the Dicer enzyme. In this case, the mature sequence is excised from the 5' arm of the hairpin.

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Stem-loop
   ua    g       u         a      g    cuug 
5'   gugu uaucagg guaacagca cuccau ugga    u
     |||| ||||||| ||||||||| |||||| ||||    c
3'   cacg guaguuu cauugucgu gaggug accu    c
   --    g       u         a      -    uaug 
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Confidence
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Genome context
Coordinates (JGI4.2) Overlapping transcripts
GL172818.1: 575333-575412 [+]
antisense
ENSXETT00000064574 ; iars2-202; intron 12
ENSXETT00000005915 ; iars2-201; intron 12
Clustered miRNAs
< 10kb from xtr-mir-194-1
xtr-mir-194-1GL172818.1: 575333-575412 [+]
xtr-mir-215GL172818.1: 576168-576264 [+]

Mature sequence xtr-miR-194

Accession MIMAT0003617
Sequence

15 - 

uguaacagcaacuccaugugga

 - 36

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Evidence experimental; Northern [1]
Predicted targets

References

1