miRBase entry: xtr-mir-194-2

Stem-loop xtr-mir-194-2

Accession

MI0004858

Description

Xenopus tropicalis xtr-mir-194-2 precursor miRNA

Gene family

MIPF0000055; mir-194

Sequence

ugaugcucauaaccUGUAACAGCAACUCCAUGUGGAaguagauauaauauuccgguggagaugcuguuaucuguaauguguaucua
.(((((.(((.((..(((((((((.((((((.(((((............))))))))))).)))))))))..)).))).)))))..

Structure

-u     u   a  cU         A      G     guaga 
  gaugc cau ac  GUAACAGCA CUCCAU UGGAa     u
  ||||| ||| ||  ||||||||| |||||| |||||      
  cuaug gua ug  uauugucgu gaggug gccuu     a
au     u   a  uc         a      -     auaau

Annotation confidence Not enough data

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Genome context

chr4: 38492064-38492149 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from xtr-mir-194-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xtr-miR-194

Accession	MIMAT0003617
Description	Xenopus tropicalis xtr-miR-194 mature miRNA
Sequence	15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence	experimental Northern [1]

References

PubMed ID: 18032731
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
"Tang GQ, Maxwell ES"
"Genome Res (2008) 18:104-112