miRBase entry: xtr-mir-181a-2

Stem-loop xtr-mir-181a-2


Accession
MI0004866
Description
Xenopus tropicalis xtr-mir-181a-2 precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

uugagggcuucagagAACAUUCAACGCUGUCGGUGAGUuugagaaaguguaaaaauauaaACCAUCGGCCGUUGACUGUACCcugaggcuuuuca
..(((((((((((.(.(((.((((((..(((((((.(((((................)))))))))))))))))).))).).)))))))))))..

Structure
uu           a A   U      CU       A     agaaagu 
  gagggcuucag g ACA UCAACG  GUCGGUG GUuug       g
  ||||||||||| | ||| ||||||  ||||||| |||||        
  uuuucggaguc C UGU AGUUGC  CGGCUAC CAaau       u
ac           C A   C      --       -     auaaaaa 


Annotation confidence Not enough data
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Genome context
KV460364.1: 1377155-1377249 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from xtr-mir-181a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-181a-5p

Accession MIMAT0003625
Description Xenopus tropicalis xtr-miR-181a-5p mature miRNA
Sequence 16 - AACAUUCAACGCUGUCGGUGAGU - 38
Evidence experimental
Northern [1]

Mature xtr-miR-181a-2-3p

Accession MIMAT0005461
Description Xenopus tropicalis xtr-miR-181a-2-3p mature miRNA
Sequence 61 - ACCAUCGGCCGUUGACUGUACC - 82
Evidence not_experimental

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112