Stem-loop xtr-mir-18a

Accession

MI0004893

Description

Xenopus tropicalis xtr-mir-18a precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

gugcuuuuuguccUAAGGUGCAUCUAGUGCAGAUAGugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUggcauaaaaagu
..(((((((((((.((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..)).)))))))))

Structure

gu         -  -U    U    C   U    A   -  aa u 
  gcuuuuugu cc  AAGG GCAU UAG GCAG UAG ug  g a
  ||||||||| ||  |||| |||| ||| |||| ||| ||  | g
  ugaaaaaua gg  UUCC CGUG AUC CGUC Auc ac  u a
--         c  UC    U    A   C    -   u  ga u 

Annotation confidence Not enough data

Genome context

chr2: 120020254-120020340 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from xtr-mir-18a

Mature xtr-miR-18a-5p

• Accession: MIMAT0003652
• Description: Xenopus tropicalis xtr-miR-18a-5p mature miRNA
• Sequence: 14 - UAAGGUGCAUCUAGUGCAGAUAG - 36
• Evidence: not_experimental

Mature xtr-miR-18a-3p

• Accession: MIMAT0005462
• Description: Xenopus tropicalis xtr-miR-18a-3p mature miRNA
• Sequence: 55 - ACUGCCCUAAGUGCUCCUUCU - 75
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112