miRBase entry: xtr-mir-200a

Stem-loop xtr-mir-200a


Accession
MI0004945
Description
Xenopus tropicalis xtr-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

ugguccucuauggacaucuuacuagacagugcuggauuuauuuuaucuuuucUAACACUGUCUGGUAACGAUGUuuaaagagugagcca
(((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).)).)))

Structure
   -  -    a        -             c    uuuauu 
ugg uc cucu uggacauc uuacuagacagug ugga      u
||| || |||| |||||||| ||||||||||||| ||||       
acc ag gaga auuUGUAG AAUGGUCUGUCAC AUcu      u
   g  u    a        C             A    uuucua 


Annotation confidence Not enough data
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Genome context
chr7: 78800601-78800689 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from xtr-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature xtr-miR-200a

Accession MIMAT0003693
Description Xenopus tropicalis xtr-miR-200a mature miRNA
Sequence 53 - UAACACUGUCUGGUAACGAUGU - 74
Evidence experimental
Northern [1]

References

  1. PubMed ID: 18032731
    Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
    "Tang GQ, Maxwell ES"
    "Genome Res (2008) 18:104-112