Stem-loop sequence bmo-mir-279a

AccessionMI0004982 (change log)
Previous IDsbmo-mir-279
DescriptionBombyx mori miR-279a stem-loop
Gene family MIPF0000184; mir-279
Literature search

8 open access papers mention bmo-mir-279a
(13 sentences)

Stem-loop
   a  u        uuc        ga        g    uuua 
5'  cg caauuucu   gaugagug  gguuuagu caug    u
    || ||||||||   ||||||||  |||||||| ||||    u
3'  gc guugaagg   cuacucac  cuagauca guac    u
   a  -        uac        ac        -    caca 
Get sequence
Deep sequencing
88745 reads, 1.61e+04 reads per million, 3 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (ASM15162v1; GCA_000151625.1) Overlapping transcripts
NW_004581691.1: 11805-11889 [+]
intergenic
Database links

Mature sequence bmo-miR-279a

Accession MIMAT0004204
Previous IDsbmo-miR-279
Sequence

52 - 

ugacuagauccacacucau

 - 70

Get sequence
Deep sequencing88735 reads, 3 experiments
Evidence experimental; Northern [2], RT-PCR [3], Illumina [4]
Database links

References

1
PMID:16972323 "Computational prediction of microRNA genes in silkworm genome" Tong CZ, Jin YF, Zhang YZ J Zhejiang Univ Sci B. 7:806-816(2006).
2
PMID:18507836 "Identification and characteristics of microRNAs from Bombyx mori" He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y BMC Genomics. 9:248(2008).
3
4
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).