Stem-loop gga-mir-460a

Accession

MI0004998

Description

Gallus gallus gga-mir-460a precursor miRNA

Gene family

MIPF0000134; mir-460

Literature search

7 open access papers mention gga-mir-460a
(16 sentences)

Sequence

30552 reads, 424 reads per million, 5 experiments

cugacuauauagcaCCUGCAUUGUACACACUGUGUGuguuaacuggaaaugCACAGCGCAUACAAUGUGGAUUcuguagaagucacucac
.(((((.(((((...((((((((((..(.((((((((...........)))))))).)..))))))))))...)))))..))))).....

Structure

----c     -a     caC          CA A        guua 
     ugacu  uauag   CUGCAUUGUA  C CUGUGUGu    a
     |||||  |||||   ||||||||||  | ||||||||    c
     acuga  auguc   GGUGUAACAU  G GACACgua    u
cacuc     ag     UUA          AC C        aagg 

Annotation confidence High

Genome context

chr2: 3692580-3692669 [+]

Mature gga-miR-460a-5p

• Accession: MIMAT0003778
• Description: Gallus gallus gga-miR-460a-5p mature miRNA
• Sequence: 15 - CCUGCAUUGUACACACUGUGUG - 36
• Evidence: experimental ; cloned [1], Illumina [2]

Mature gga-miR-460a-3p

• Accession: MIMAT0026646
• Description: Gallus gallus gga-miR-460a-3p mature miRNA
• Sequence: 52 - CACAGCGCAUACAAUGUGGAUU - 73
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45