Stem-loop sequence bta-mir-181b-2

Accession

MI0005013 (change log)

Previous IDs

bta-mir-181b

Description

Bos taurus miR-181b-2 stem-loop

Gene family

MIPF0000007; mir-181

Literature search

23 open access papers mention bta-mir-181b-2
(56 sentences)

Stem-loop

   cuga   -     cuca          cu           u  cu 
5'     ugg cugca    acauucauug  gucgguggguu ga  u
       ||| |||||    ||||||||||  ||||||||||| ||  u
3'     acc ggcgu    uguaaguaac  uagucacucaa cu  g
   acaa   a     caaa          --           -  aa 

Deep sequencing

62360 reads, 478 reads per million, 78 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr11: 95967281-95967369 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-181b-2

• bta-mir-181a-2: chr11: 95966066-95966175 [+]
• bta-mir-181b-2: chr11: 95967281-95967369 [+]

Database links

• EntrezGene:MIR181B-2
• RNAcentral:URS000075C021_9913
• miRBase Tracker:MI0005013

Mature sequence bta-miR-181b

• Accession: MIMAT0003793
• Sequence: 16 - aacauucauugcugucgguggguu - 39
• Deep sequencing: 124458 reads, 78 experiments
• Evidence: experimental; cloned [1,3]
• Predicted targets:
  • TargetScanVert:bta-miR-181b

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).