Stem-loop bta-mir-380

Accession

MI0005021

Description

Bos taurus bta-mir-380 precursor miRNA

Gene family

MIPF0000126; mir-379

Literature search

1 open access papers mention bta-mir-380
(5 sentences)

Sequence

7609 reads, 80 reads per million, 63 experiments

aagaUGGUUGACCAUAGAACAUGCGCugucucuaugucgUAUGUAAUGUGGUCCACGUCUu
((((((...(((((((..((((((((.........).)))))))..)))))))..))))))

Structure

      GUU       GA       - ugu 
aagaUG   GACCAUA  ACAUGCG C   c
||||||   |||||||  ||||||| |   u
uUCUGC   CUGGUGU  UGUAUgc g   c
      -AC       AA       u uau 

Annotation confidence Not enough data

Genome context

chr21: 67843176-67843236 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from bta-mir-380

Mature bta-miR-380-5p

• Accession: MIMAT0003803
• Description: Bos taurus bta-miR-380-5p mature miRNA
• Sequence: 5 - UGGUUGACCAUAGAACAUGCGC - 26
• Evidence: experimental ; Array [2], qRT-PCR [2]

Mature bta-miR-380-3p

• Accession: MIMAT0003804
• Description: Bos taurus bta-miR-380-3p mature miRNA
• Sequence: 40 - UAUGUAAUGUGGUCCACGUCU - 60
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677