Stem-loop sequence bta-mir-181c

Accession

MI0005032 (change log)

Description

Bos taurus miR-181c stem-loop

Gene family

MIPF0000007; mir-181

Literature search

19 open access papers mention bta-mir-181c
(58 sentences)

Stem-loop

   ----uug   a  g       gaa        cu       a     ggca 
5'        cca gg uuugggg   cauucaac  gucggug guuug    g
          ||| || |||||||   ||||||||  ||||||| |||||    c
3'        ggu cc gagcccc   gugaguug  cagcuac caaac    u
   ccgucaa   -  g       -ag        -c       -     ggac 

Deep sequencing

49461 reads, 303 reads per million, 71 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr7: 12978745-12978841 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-181c

• bta-mir-181c: chr7: 12978745-12978841 [+]
• bta-mir-181d: chr7: 12978911-12979023 [+]

Database links

• EntrezGene:MIR181C
• miRBase Tracker:MI0005032

Mature sequence bta-miR-181c

• Accession: MIMAT0003817
• Sequence: 19 - aacauucaaccugucggugaguuu - 42
• Deep sequencing: 42873 reads, 71 experiments
• Evidence: experimental; cloned [1], Array [2], qRT-PCR [2]
• Predicted targets:
  • TargetScanVert:bta-miR-181c

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).
2. PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).