Stem-loop sequence bta-mir-29b-2

Accession

MI0005043 (change log)

Previous IDs

bta-mir-29b

Description

Bos taurus miR-29b-2 stem-loop

Gene family

MIPF0000009; mir-29

Literature search

39 open access papers mention bta-mir-29b-2
(259 sentences)

Stem-loop

            -          c      g  u    uuuucc 
5' cuucuggaa gcugguuuca auggug cu agau      a
   ||||||||| |||||||||| |||||| || ||||       
3' gaggauuuu ugacuaaagu uaccac ga ucua      u
            g          u      -  -    uguuuc 

Deep sequencing

142267 reads, 674 reads per million, 76 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr16: 77732601-77732681 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-29b-2

• bta-mir-29b-2: chr16: 77732601-77732681 [+]
• bta-mir-29c: chr16: 77733161-77733248 [+]

Database links

• EntrezGene:MIR29B-2
• RNAcentral:URS00001E96DA_9913
• miRBase Tracker:MI0005043

Mature sequence bta-miR-29b

• Accession: MIMAT0003828
• Sequence: 52 - uagcaccauuugaaaucaguguu - 74
• Deep sequencing: 284410 reads, 76 experiments
• Evidence: experimental; cloned [1,4], Array [2], qRT-PCR [2]
• Predicted targets:
  • TargetScanVert:bta-miR-29b

References

1. PMID:17105755 "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues" Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP Physiol Genomics. 29:35-43(2007).
2. PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).