miRBase entry: bta-mir-487b

Stem-loop bta-mir-487b


Accession
MI0005060
Description
Bos taurus bta-mir-487b precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
4 open access papers mention bta-mir-487b
(11 sentences)

Sequence

2212 reads, 42 reads per million, 63 experiments
uugguacuuggagagugguuaucccuguccuguucguuuuacucaugucgAAUCGUACAGGGUCAUCCACUUuuucaguaucaa
.(((((((.(((((((((....((((((.(.(((((............))))).).))))))....))))))))).))))))).

Structure
u       u         uuau      c u     uuuua 
 ugguacu ggagagugg    cccugu c guucg     c
 ||||||| |||||||||    |||||| | |||||      
 acuauga uuuUUCACC    GGGACA G UAAgc     u
a       c         UACU      U C     uguac 


Annotation confidence Not enough data
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Genome context
chr21: 67861931-67862014 [+]
Clustered miRNAs
18 other miRNAs are < 10 kb from bta-mir-487b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-487b

Accession MIMAT0003847
Description Bos taurus bta-miR-487b mature miRNA
Sequence 51 - AAUCGUACAGGGUCAUCCACUU - 72
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43