miRBase entry: bta-mir-30c

Stem-loop bta-mir-30c


Accession
MI0005064
Description
Bos taurus bta-mir-30c precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
21 open access papers mention bta-mir-30c
(120 sentences)

Sequence

75410 reads, 828 reads per million, 76 experiments
cagacuguaaccaugccguagugugUGUAAACAUCCUACACUCUCAGCugugagcucgagguggcugggagaggguuguuuacuccuucugccauggaaaacguc
..(((.((..(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...)))))))))...)))))

Structure
ca   u  -aa     cc    ugu U       U   ACA         guga   c 
  gac gu   ccaug  guag   g GUAAACA CCU   CUCUCAGCu    gcu  
  ||| ||   |||||  ||||   | ||||||| |||   |||||||||    ||| g
  cug ca   gguac  cguc   c cauuugu ggg   gagggucgg    ugg  
--   -  aaa     --    uuc u       u   --a         ----   a 


Annotation confidence High
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Comments
The mature miR-30c sequence identified by Sonstegard et al [1] has an additional G base at the 3' end, which conflicts with the draft genome sequence.

Genome context
chr3: 106449904-106450008 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-30c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-30c

Accession MIMAT0003850
Description Bos taurus bta-miR-30c mature miRNA
Sequence 26 - UGUAAACAUCCUACACUCUCAGC - 48
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43