Stem-loop sequence mtr-MIR395c

Accession

MI0005070 (change log)

Description

Medicago truncatula miR395c stem-loop

Gene family

MIPF0000016; MIR395

Literature search

5 open access papers mention mtr-MIR395c
(12 sentences)

Stem-loop

            ug           cau     uau      gg      a 
5' gaguuccuu  aacgcuucaug   gagaa   cuauuu  ucuaau u
   |||||||||  |||||||||||   |||||   ||||||  ||||||  
3' cucaagggg  uugugaaguau   cuuuu   gauaga  agauua c
            gu           cuu     -cu      aa      c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 16622264-16622360 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR395c

• mtr-MIR395c: chr5: 16622264-16622360 [-]
• mtr-MIR395d: chr5: 16616400-16616494 [-]

Database links

• miRBase Tracker:MI0005070

Mature sequence mtr-miR395c

• Accession: MIMAT0003856
• Sequence: 77 - augaaguguuugggggaacuc - 97
• Evidence: by similarity; MI0001033

References

1. PMID:16117853 "Molecular evolution of the rice miR395 gene family" Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L Cell Res. 15:631-638(2005).