miRBase entry: mtr-MIR395f

Stem-loop mtr-MIR395f


Accession
MI0005073
Description
Medicago truncatula mtr-MIR395f precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention mtr-MIR395f
(12 sentences)

Sequence

gaguuccuuugaacgcuucaugcaugagaaauaucucuuugguuuaaaauccauuagaaaagauaguauuuucuucuAUGAAGUGUUUGGGGGAACUC
((((((((((((((((((((((...(((((.(((((((.(((........)))..)))...))))...)))))...))))))))))))))))))))))

Structure
                      cau     --a    ---   -u   uuu 
gaguuccuuugaacgcuucaug   gagaa   uauc   ucu  ugg   a
||||||||||||||||||||||   |||||   ||||   |||  |||    
CUCAAGGGGGUUUGUGAAGUAu   cuuuu   auag   aga  acc   a
                      cuu     aug    aaa   uu   uaa 


Annotation confidence Not enough data
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Genome context
chr5: 16598925-16599022 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mtr-MIR395f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR395f

Accession MIMAT0003859
Description Medicago truncatula mtr-miR395f mature miRNA
Sequence 78 - AUGAAGUGUUUGGGGGAACUC - 98
Evidence not_experimental

References

  1. PubMed ID: 16117853
    Molecular evolution of the rice miR395 gene family
    "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
    "Cell Res (2005) 15:631-638