miRBase entry: mtr-MIR395m

Stem-loop mtr-MIR395m


Accession
MI0005080
Description
Medicago truncatula mtr-MIR395m precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention mtr-MIR395m
(12 sentences)

Sequence

gaguuccuuugaacgcuucaugcaugagaauaucuaucuauuuggucuaaaauccauuagaaaagauaguucuucuuaaAUGAAGUGUUUGGGGGAACUC
(((((((((((((((((((((....((((((((((.((((..(((........))).))))..)))).)))))).....)))))))))))))))))))))

Structure
                     -gcau      -    -a    uu   ucu 
gaguuccuuugaacgcuucau     gagaau aucu  ucua  ugg   a
|||||||||||||||||||||     |||||| ||||  ||||  |||    
CUCAAGGGGGUUUGUGAAGUA     uucuug uaga  agau  acc   a
                     aauuc      a    aa    -u   uaa 


Annotation confidence Not enough data
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Genome context
chr5: 16576530-16576629 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR395m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR395m

Accession MIMAT0003866
Description Medicago truncatula mtr-miR395m mature miRNA
Sequence 80 - AUGAAGUGUUUGGGGGAACUC - 100
Evidence not_experimental

References

  1. PubMed ID: 16117853
    Molecular evolution of the rice miR395 gene family
    "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
    "Cell Res (2005) 15:631-638