Stem-loop osa-MIR395m

Accession

MI0005084

Description

Oryza sativa osa-MIR395m precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

39 open access papers mention osa-MIR395m
(171 sentences)

Sequence

24 reads, 17 reads per million, 2 experiments

gaguucuccucaaaucacuucaguagauagcuagcuaggcuucauugcauuacacuguuacaaaacugugagcauggggccaaaagcuaguuguauauaGUGAAGUGUUUGGGGGAACUC
(((((((((.((((.(((((((.((.((((((((((.((((((((.((.(((((..(((....))))))))))))))))))...))))))))))...)).))))))))))))))))))))

Structure

         u    u       g  --g          --a        u  a     cu   a 
gaguucucc caaa cacuuca ua   auagcuagcu   ggcuucau gc uuaca  guu c
||||||||| |||| ||||||| ||   ||||||||||   |||||||| || |||||  |||  
CUCAAGGGG GUUU GUGAAGU au   uguugaucga   ccggggua cg agugu  caa a
         -    -       G  aua          aaa        -  -     --   a 

Annotation confidence Not enough data

Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context

Chr4: 32621993-32622112 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from osa-MIR395m

Mature osa-miR395m

• Accession: MIMAT0003870
• Description: Oryza sativa osa-miR395m mature miRNA
• Sequence: 100 - GUGAAGUGUUUGGGGGAACUC - 120
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638