Stem-loop osa-MIR395o

Accession

MI0005086

Description

Oryza sativa osa-MIR395o precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

39 open access papers mention osa-MIR395o
(166 sentences)

Sequence

3 reads, 1 reads per million, 1 experiments

gaguucucuuuaagcacuucauacgacaccauuauuguuaggguuguuAUGAAGUGUUUGGAGGAACUC
((((((.((((((((((((((((((((.((..........)))))).))))))))))))))))))))))

Structure

      u                -    a  auua 
gaguuc cuuuaagcacuucaua cgac cc    u
|||||| |||||||||||||||| |||| ||     
CUCAAG GAGGUUUGUGAAGUAu guug gg    u
      -                u    -  auug 

Annotation confidence Not enough data

Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context

Chr4: 32622381-32622449 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from osa-MIR395o

Mature osa-miR395o

• Accession: MIMAT0003872
• Description: Oryza sativa osa-miR395o mature miRNA
• Sequence: 49 - AUGAAGUGUUUGGAGGAACUC - 69
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638