miRBase entry: osa-MIR395q

Stem-loop osa-MIR395q


Accession
MI0005088
Description
Oryza sativa osa-MIR395q precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
39 open access papers mention osa-MIR395q
(166 sentences)

Sequence

29 reads, 21 reads per million, 2 experiments
gaguucccuucaagcacuucacaugacacuauuucaaugucuauuauGUGAAGUGUUUGGGGGAACUC
(((((((((.((((((((((((((((.((.........))...)))))))))))))))))))))))))

Structure
         u                --c  uau 
gaguucccu caagcacuucacauga   ac   u
||||||||| ||||||||||||||||   ||   u
CUCAAGGGG GUUUGUGAAGUGuauu   ug   c
         -                auc  uaa 


Annotation confidence Not enough data
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Comments
Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context
Chr4: 32622668-32622735 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from osa-MIR395q
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR395q

Accession MIMAT0003874
Description Oryza sativa osa-miR395q mature miRNA
Sequence 48 - GUGAAGUGUUUGGGGGAACUC - 68
Evidence not_experimental
Database links

References

  1. PubMed ID: 16117853
    Molecular evolution of the rice miR395 gene family
    "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
    "Cell Res (2005) 15:631-638