Stem-loop sequence osa-MIR395r

Accession

MI0005092 (change log)

Description

Oryza sativa miR395r stem-loop

Gene family

MIPF0000016; MIR395

Literature search

39 open access papers mention osa-MIR395r
(166 sentences)

Stem-loop

            u   c          ----  ca     
5' gaguucccu caa cacuucacgu    gg  cuau 
   ||||||||| ||| ||||||||||    ||  ||| u
3' cucaagggg guu gugaagugua    cc  gauu 
            -   u          ucau  ag     

Deep sequencing

32 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Database links

• miRBase Tracker:MI0005092

Mature sequence osa-miR395r

• Accession: MIMAT0003878
• Sequence: 48 - gugaaguguuugggggaacuc - 68
• Deep sequencing: 27 reads, 2 experiments
• Evidence: by similarity; MI0001007
• Database links:
  • RNAcentral:URS000034BBE9_39947

References

1. PMID:16117853 "Molecular evolution of the rice miR395 gene family" Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L Cell Res. 15:631-638(2005).