Stem-loop sequence ath-MIR774a

Accession MI0005104
Previous IDs ath-MIR774
Description Arabidopsis thaliana miR774 stem-loop
Gene family MIPF0001101; MIR774
Stem-loop 
uc    c          u              u    auu     c   u 
  auuu agauggcugu uggguaacuaauau uaag   uuggu aau u
  |||| |||||||||| |||||||||||||| ||||   ||||| |||  
  uaaa ucuaccggua acccauugguuaua auuu   aacca uug a
uu    c          u              u    ---     -   a
Get sequence
Deep sequencing
9 reads, 4 experiments
Genome context
Coordinates (TAIR10) Overlapping transcripts
chr1: 22149936-22150033 [+]
intergenic
Clustered miRNAs
< 10kb from ath-MIR774a
ath-MIR859 chr1: 22149718-22149843 [+]
ath-MIR774a chr1: 22149936-22150033 [+]
ath-MIR774b chr1: 22150128-22150266 [+]

Mature sequence ath-miR774a

Accession MIMAT0003933
Previous IDs ath-miR774
Sequence

70 -  

uugguuacccauauggccauc

 - 90

Get sequence
Deep sequencing 8 reads, 4 experiments
Evidence experimental; MPSS [1], Northern [1], 454 [2]
Validated targets

References

1
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
2
PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes" Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC PLoS One. 2:e219(2007).