Stem-loop ptc-MIR171k

Accession

MI0005114

Description

Populus trichocarpa ptc-MIR171k precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

6 open access papers mention ptc-MIR171k
(11 sentences)

Sequence

gauacuggcucgguucaaccucaucguagucuugaugaaugauucaaaucuaugguuGGAUUGAGCCGCGCCAAUAUC
((((.((((.((((((((((..(((((((..((((........))))..))))))).)).)))))))).)))).))))

Structure

    c    u        -  uc       uc    uga 
gaua uggc cgguucaa cc  aucguag  uuga   a
|||| |||| |||||||| ||  |||||||  ||||    
CUAU ACCG GCCGAGUU GG  ugguauc  aacu   u
    A    C        A  -u       ua    uag 

Annotation confidence Not enough data

Comments

This sequence is a predicted homolog of a verified miRNA in Arabidopsis (E. Bonnet, pers. comm.).

Genome context

CM000351.2: 5060947-5061024 [-]

Mature ptc-miR171k

• Accession: MIMAT0003943
• Description: Populus trichocarpa ptc-miR171k mature miRNA
• Sequence: 58 - GGAUUGAGCCGCGCCAAUAUC - 78
• Evidence: not_experimental

References