Stem-loop ptc-MIR403c

Accession

MI0005115

Description

Populus trichocarpa ptc-MIR403c precursor miRNA

Gene family

MIPF0000290; MIR403

Literature search

1 open access papers mention ptc-MIR403c
(1 sentences)

Sequence

ggUUUGUGCGUGGAUCUGAGGCCaucacaaccguccacuacacgaccacccaauggcuUUAGAUUCACGCACAAACUCG
(((((((((((((((((((((((((.......(((........)))......)))))))))))))))))))))))))..

Structure

--                         cacaacc   cac 
  ggUUUGUGCGUGGAUCUGAGGCCau       guc   u
  |||||||||||||||||||||||||       |||    
  UCAAACACGCACUUAGAUUucggua       cag   a
GC                         -acccac   cac 

Annotation confidence Not enough data

Genome context

CM000344.2: 6485433-6485511 [+]

Mature ptc-miR403c-3p

• Accession: MIMAT0003944
• Description: Populus trichocarpa ptc-miR403c-3p mature miRNA
• Sequence: 59 - UUAGAUUCACGCACAAACUCG - 79
• Evidence: experimental ; miRNAseq [1]

Mature ptc-miR403c-5p

• Accession: MIMAT0022932
• Description: Populus trichocarpa ptc-miR403c-5p mature miRNA
• Sequence: 3 - UUUGUGCGUGGAUCUGAGGCC - 23
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034