miRBase entry: sme-let-7b

Stem-loop sme-let-7b


Accession
MI0005123
Description
Schmidtea mediterranea sme-let-7b precursor miRNA

Literature search
2 open access papers mention sme-let-7b
(9 sentences)

Sequence

guaacauuaacaauUGAGGUAGAUUGUUGGAUGACUuaauuuuaaagCCAUUCAACUAUCUGUCUUCUCuuguuaaauuac
((((..(((((((..(((((((((.((((((((.(((.......))).)))))))).))))).))))..))))))).))))

Structure
    ca       uU    -     U        A   aa 
guaa  uuaacaa  GAGG UAGAU GUUGGAUG CUu  u
||||  |||||||  |||| ||||| |||||||| |||  u
cauu  aauuguu  CUUC GUCUA CAACUUAC gaa  u
    -a       CU    U     U        C   au 


Annotation confidence Not enough data
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Genome context
Contig20276: 1039-1119 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sme-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-let-7b-5p

Accession MIMAT0003953
Description Schmidtea mediterranea sme-let-7b-5p mature miRNA
Sequence 15 - UGAGGUAGAUUGUUGGAUGACU - 36
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-let-7b-3p

Accession MIMAT0003954
Description Schmidtea mediterranea sme-let-7b-3p mature miRNA
Sequence 48 - CCAUUCAACUAUCUGUCUUCUC - 69
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491