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miRBase |
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Stem-loop sequence sme-mir-1a |
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Accession | MI0005128 (change log) | ||||
Description | Schmidtea mediterranea miR-1a stem-loop | ||||
Stem-loop |
a u ga a caa g 5' agcg gcau uuuc ggcauuucauag gu au a |||| |||| |||| |||||||||||| || || 3' ucgu cgua aaag cuguaagguguc ca ua a a u ag - -aa a |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence sme-miR-1a-5p |
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Accession | MIMAT0012090 |
Previous IDs | sme-miR-1a* |
Sequence |
5 - agcauuuuucgaggcauuucau - 26 |
Evidence | experimental; 454 [2], Illumina [2-3] |
Mature sequence sme-miR-1a-3p |
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Accession | MIMAT0003960 |
Previous IDs | sme-miR-1a |
Sequence |
50 - uggaaugucgagaaauaugcau - 71 |
Evidence | experimental; cloned [1], Northern [1], 454 [2], Illumina [2] |
References |
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1 |
PMID:16849698
"MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology"
RNA. 12:1640-1649(2006).
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2 |
PMID:19564616
"High-resolution profiling and discovery of planarian small RNAs"
Proc Natl Acad Sci U S A. 106:11546-11551(2009).
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3 |
PMID:19553344
"Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea"
RNA. 15:1483-1491(2009).
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