miRBase entry: sme-mir-7a

Stem-loop sme-mir-7a


Accession
MI0005136
Description
Schmidtea mediterranea sme-mir-7a precursor miRNA

Literature search
1 open access papers mention sme-mir-7a
(1 sentences)

Sequence

cauaauuUGGAAGACUAUUGAUUUAGUUGAauugguuaauuuacuuUCAACUGAUUCUAGUCAUCCUUAug
(((((...(((.(((((..((.(((((((((..(((......)))))))))))).))))))).))))))))

Structure
     uuU   A     UU  U         uu   ua 
cauaa   GGA GACUA  GA UUAGUUGAa  ggu  a
|||||   ||| |||||  || |||||||||  |||   
guAUU   CCU CUGAU  CU AGUCAACUu  uca  u
     ---   A     --  U         --   uu 


Annotation confidence Not enough data
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Genome context
Contig4049: 1281-1351 [+]

Database links

Mature sme-miR-7a-5p

Accession MIMAT0003969
Description Schmidtea mediterranea sme-miR-7a-5p mature miRNA
Sequence 8 - UGGAAGACUAUUGAUUUAGUUGA - 30
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

Mature sme-miR-7a-3p

Accession MIMAT0012096
Description Schmidtea mediterranea sme-miR-7a-3p mature miRNA
Sequence 47 - UCAACUGAUUCUAGUCAUCCUUA - 69
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491