miRBase entry: sme-mir-8a

Stem-loop sme-mir-8a


Accession
MI0005139
Description
Schmidtea mediterranea sme-mir-8a precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

aauGACAUCGAAUCAGACAGUUUAagacagaauuuaauaaaaucUAAUACUGUCAGGUAACGAUGCCauu
((((.(((((.(((.((((((...(((...............)))...)))))).)))..))))).))))

Structure
    A     -A   A      UUA   cagaau 
aauG CAUCG  AUC GACAGU   aga      u
|||| |||||  ||| ||||||   |||      u
uuaC GUAGC  UGG CUGUCA   Ucu      a
    C     AA   A      UAA   aaaaua 


Annotation confidence Not enough data
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Genome context
Contig1018: 3846-3915 [+]

Database links

Mature sme-miR-8a-5p

Accession MIMAT0012099
Description Schmidtea mediterranea sme-miR-8a-5p mature miRNA
Sequence 4 - GACAUCGAAUCAGACAGUUUA - 24
Evidence experimental
454 [2], Illumina [2-3]

Mature sme-miR-8a-3p

Accession MIMAT0003972
Description Schmidtea mediterranea sme-miR-8a-3p mature miRNA
Sequence 45 - UAAUACUGUCAGGUAACGAUGCC - 67
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491