Stem-loop sequence sme-mir-8a

Accession

MI0005139 (change log)

Previous IDs

sme-mir-8

Description

Schmidtea mediterranea miR-8a stem-loop

Gene family

MIPF0000019; mir-8

Stem-loop

       a     -a   a      uua   cagaau 
5' aaug caucg  auc gacagu   aga      u
   |||| |||||  ||| ||||||   |||      u
3' uuac guagc  ugg cuguca   ucu      a
       c     aa   a      uaa   aaaaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WUSTL3.1): Contig1018: 3846-3915 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005139

Mature sequence sme-miR-8a-5p

• Accession: MIMAT0012099
• Previous IDs: sme-miR-8a*
• Sequence: 4 - gacaucgaaucagacaguuua - 24
• Evidence: experimental; 454 [2], Illumina [2-3]

Mature sequence sme-miR-8a-3p

• Accession: MIMAT0003972
• Previous IDs: sme-miR-8;sme-miR-8a
• Sequence: 45 - uaauacugucagguaacgaugcc - 67
• Evidence: experimental; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2. PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3. PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).