Stem-loop sme-mir-10b

Accession

MI0005140

Description

Schmidtea mediterranea sme-mir-10b precursor miRNA

Literature search

1 open access papers mention sme-mir-10b
(1 sentences)

Sequence

cugucaccgaucugAACCCUGUAGAUCCGAGUUUGAuuaaugccaauguugaguuuugaagcauuucaaucaaaaUCGAAUCUUCAAGGUGAAgcuggugauag
(((((((((..((..(((.((.((((.(((.(((((((((((((((.........)))..)))))..))))))).))).)))).)).)))..)).)))))))))

Structure

         au  gA   C  U    C   G       --     --   ugu 
cugucaccg  cu  ACC UG AGAU CGA UUUGAuu  aaugc  caa   u
|||||||||  ||  ||| || |||| ||| |||||||  |||||  |||   g
gauaguggu  gA  UGG AC UCUA GCU aaacuaa  uuacg  guu   a
         -c  AG   A  U    A   a       cu     aa   uug 

Annotation confidence Not enough data

Genome context

Contig24755: 3773-3876 [-]

Mature sme-miR-10b-5p

• Accession: MIMAT0003973
• Description: Schmidtea mediterranea sme-miR-10b-5p mature miRNA
• Sequence: 15 - AACCCUGUAGAUCCGAGUUUGA - 36
• Evidence: experimental ; cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-10b-3p

• Accession: MIMAT0003974
• Description: Schmidtea mediterranea sme-miR-10b-3p mature miRNA
• Sequence: 76 - UCGAAUCUUCAAGGUGAA - 93
• Evidence: experimental ; cloned [1], 454 [2], Illumina [2-3]

References

1. PubMed ID: 16849698
   MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
   "Palakodeti D, Smielewska M, Graveley BR"
   "RNA (2006) 12:1640-1649


2. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


3. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491