miRBase entry: sme-mir-746

Stem-loop sme-mir-746


Accession
MI0005144
Description
Schmidtea mediterranea sme-mir-746 precursor miRNA


Sequence

ugauaauucgcauaacaucuaGCCGGAUAAAUCCUGUGUGCAUugauagaaagugaaaugauuuuauucauaagaucuaccauaucUAGCACCAGGGUAUAUCGGGAUugaaacgaacaugaucauca
((((..((((.......((...((.((((.((((((.((((.....((((..(((....(((((((....)))))))...))).)))))))))))))).)))).))...))..))))....))))...

Structure
---    --aa    cauaaca  uaG  G    A      U    AUuga    aa   aaau       u 
   ugau    uucg       uc   CC GAUA AUCCUG GUGC     uaga  gug    gauuuua u
   ||||    ||||       ||   || |||| |||||| ||||     ||||  |||    |||||||  
   acua    aagc       ag   GG CUAU UGGGAC CACG     AUcu  uac    cuagaau c
acu    guac    -----aa  uUA  G    A      -    -----    -a   -cau       a 


Annotation confidence Not enough data
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Genome context
Contig1695: 140627-140754 [-]

Database links

Mature sme-miR-746-5p

Accession MIMAT0012103
Description Schmidtea mediterranea sme-miR-746-5p mature miRNA
Sequence 22 - GCCGGAUAAAUCCUGUGUGCAU - 43
Evidence experimental
454 [2], Illumina [2-3]

Mature sme-miR-746-3p

Accession MIMAT0003978
Description Schmidtea mediterranea sme-miR-746-3p mature miRNA
Sequence 87 - UAGCACCAGGGUAUAUCGGGAU - 108
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491