miRBase entry: sme-mir-31a

Stem-loop sme-mir-31a


Accession
MI0005145
Description
Schmidtea mediterranea sme-mir-31a precursor miRNA

Literature search
1 open access papers mention sme-mir-31a
(1 sentences)

Sequence

uuuuauuguuauguuuuaAGGCAAGAUGUUGGCAUAACUGAcaacaauucgaaaggauuaauuuCAGUUACGUUAGCACUUACCAgauagcaaaacaaa
.....(((((.((((....((.(((.(((((((.(((((((....(((((....)))))....))))))).)))))))))).))....)))).))))).

Structure
uuuua     a    uuaA  C   A       A       caac     g 
     uuguu uguu    GG AAG UGUUGGC UAACUGA    aauuc a
     ||||| ||||    || ||| ||||||| |||||||    |||||  
     aacaa acga    CC UUC ACGAUUG AUUGACu    uuagg a
----a     a    uagA  A   -       C       uuaa     a 


Annotation confidence Not enough data
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Genome context
Contig18208: 1122-1220 [-]

Database links

Mature sme-miR-31a-5p

Accession MIMAT0003979
Description Schmidtea mediterranea sme-miR-31a-5p mature miRNA
Sequence 19 - AGGCAAGAUGUUGGCAUAACUGA - 41
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-31a-3p

Accession MIMAT0012104
Description Schmidtea mediterranea sme-miR-31a-3p mature miRNA
Sequence 65 - CAGUUACGUUAGCACUUACCA - 85
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491