Stem-loop sequence sme-mir-71a-2

AccessionMI0005150 (change log)
DescriptionSchmidtea mediterranea miR-71a-2 stem-loop
Gene family MIPF0000278; mir-71
Literature search

2 open access papers mention sme-mir-71a-2
(2 sentences)

Stem-loop 
   -u      uaac               gug   u       
5'   uggaua    ugaaagacacgggua   aga auggau 
     ||||||    |||||||||||||||   ||| ||||| u
3'   acuuau    acuuucugugcuuau   ucu uacuuu 
   gc      uuau               --a   c
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (WUSTL3.1) Overlapping transcripts
Contig2151: 51077-51154 [+]
intergenic
Clustered miRNAs
< 10kb from sme-mir-71a-2
sme-mir-71a-2Contig2151: 51077-51154 [+]
sme-mir-2a-2Contig2151: 51170-51250 [+]
Database links

Mature sequence sme-miR-71a-5p

Accession MIMAT0003984
Previous IDssme-miR-71a
Sequence

12 -  

ugaaagacacggguagugagau

 - 33

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Evidence experimental; cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sequence sme-miR-71a-2-3p

Accession MIMAT0013772
Previous IDssme-miR-71a-2*
Sequence

46 -  

ucucuauauucgugucuuucau

 - 67

Get sequence
Evidence experimental; 454 [2], Illumina [2-3]

References

1
PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2
PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3
PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).