miRBase entry: sme-mir-71b

Stem-loop sme-mir-71b


Accession
MI0005151
Description
Schmidtea mediterranea sme-mir-71b precursor miRNA
Gene family
MIPF0000278; mir-71

Literature search
2 open access papers mention sme-mir-71b
(2 sentences)

Sequence

ugauucaguacucuuUGAAAGACACAGGUAGUGGGACagauauuaucuaauaaaagcuugUCCUUCUAAUGUGUUUUUCGaaaaccauugaaucaaucau
(((((((((....(((((((((((((..(((.(((((((..................))))))).))).)))))))))))))....))))))))).....

Structure
-----         acuc             GG   U       auauuauc 
     ugauucagu    uuUGAAAGACACA  UAG GGGACag        u
     |||||||||    |||||||||||||  ||| |||||||         
     acuaaguua    aaGCUUUUUGUGU  AUC UCCUguu        a
uacua         ccaa             -A   U       cgaaaaua 


Annotation confidence Not enough data
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Genome context
Contig1374: 32561-32660 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from sme-mir-71b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-miR-71b-5p

Accession MIMAT0003985
Description Schmidtea mediterranea sme-miR-71b-5p mature miRNA
Sequence 16 - UGAAAGACACAGGUAGUGGGAC - 37
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-71b-3p

Accession MIMAT0003986
Description Schmidtea mediterranea sme-miR-71b-3p mature miRNA
Sequence 61 - UCCUUCUAAUGUGUUUUUCG - 80
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491