Stem-loop sequence sme-mir-124b

Accession

MI0005158 (change log)

Description

Schmidtea mediterranea miR-124b stem-loop

Gene family

MIPF0000021; mir-124

Literature search

2 open access papers mention sme-mir-124b
(7 sentences)

Stem-loop

   guau    gaa     -        aa        u   -  a 
5'     ccau   aauuu gcauuuac  cgugucuu agu uc u
       ||||   ||||| ||||||||  |||||||| ||| ||  
3'     ggua   uuaag cguaagug  gcacggaa uca ag g
   auuu    -aa     u        gc        -   c  u 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (WUSTL3.1)	Overlapping transcripts
Contig12040: 20049-20132 [-]	intergenic
Contig12797: 15839-15922 [-]	intergenic

Database links

• miRBase Tracker:MI0005158

Mature sequence sme-miR-124b-5p

• Accession: MIMAT0012113
• Previous IDs: sme-miR-124b*
• Sequence: 16 - ugcauuuacaacgugucuuuagu - 38
• Evidence: experimental; 454 [2], Illumina [2-3]

Mature sequence sme-miR-124b-3p

• Accession: MIMAT0003993
• Previous IDs: sme-miR-124b
• Sequence: 50 - uaaggcacgcggugaaugcuga - 71
• Evidence: experimental; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2. PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3. PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).