miRBase entry: sme-mir-125a

Stem-loop sme-mir-125a


Accession
MI0005160
Description
Schmidtea mediterranea sme-mir-125a precursor miRNA

Literature search
2 open access papers mention sme-mir-125a
(2 sentences)

Sequence

cuguugucuguauuuauaUCCCUGAGACCAUUGACUGCAUuuguuugagguuucaauGUAGUUUUUGGUAUCAGGAUuguggauauggagcauuc
.(((..((((((((((((..(((((.((((..((((((((.....(((....)))))))))))..)))).)))))..)))))))))))))))...

Structure
--c   ug            UC     G    UU        uuguu   g 
   ugu  ucuguauuuaua  CCUGA ACCA  GACUGCAU     uga g
   |||  ||||||||||||  ||||| ||||  ||||||||     |||  
   acg  agguauaggugu  GGACU UGGU  UUGAUGua     acu u
cuu   --            UA     A    UU        -----   u 


Annotation confidence Not enough data
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Genome context
Contig13184: 12140-12234 [-]

Database links

Mature sme-miR-125a-5p

Accession MIMAT0003996
Description Schmidtea mediterranea sme-miR-125a-5p mature miRNA
Sequence 19 - UCCCUGAGACCAUUGACUGCAU - 40
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

Mature sme-miR-125a-3p

Accession MIMAT0003997
Description Schmidtea mediterranea sme-miR-125a-3p mature miRNA
Sequence 58 - GUAGUUUUUGGUAUCAGGAU - 77
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491