Stem-loop sequence sme-mir-190a

Accession

MI0005164 (change log)

Description

Schmidtea mediterranea miR-190a stem-loop

Stem-loop

          uu ga              au     aua 
5' gauuaac  c  gauauguuugguua  uggug   g
   |||||||  |  ||||||||||||||  |||||   g
3' uuaauug  g  cuauacgagccagu  accac   u
          uu ac              -c     caa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WUSTL3.1): Contig9045: 10743-10816 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005164

Mature sequence sme-miR-190a-5p

• Accession: MIMAT0004001
• Previous IDs: sme-miR-190a
• Sequence: 12 - agauauguuugguuaauugguga - 34
• Evidence: experimental; cloned [1], 454 [2], Illumina [2-3]

Mature sequence sme-miR-190a-3p

• Accession: MIMAT0004002
• Previous IDs: sme-miR-190a*
• Sequence: 44 - accacugaccgagcauaucca - 64
• Evidence: experimental; cloned [1], Northern [1], 454 [2], Illumina [2]

References

1. PMID:16849698 "MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology" Palakodeti D, Smielewska M, Graveley BR RNA. 12:1640-1649(2006).
2. PMID:19564616 "High-resolution profiling and discovery of planarian small RNAs" Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N Proc Natl Acad Sci U S A. 106:11546-11551(2009).
3. PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).